Nanjiang Shu

Develop a number of terraform code for deploying webapollo instances on SNIC cloud for enhanced reproducibility.

High vulnerability caused by Apache Shiro

7

* We have deployed an instance of Apollo on a Cloud virtual machine and it works very well until the sysadmin reported high vulnerability caused by Apache Shiro. The reported...

Improve testing api code so that it's more robust on model updating

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**Please describe the feature** As a developer, I want the testing api code to be more robust so that it's more robust when models are updated. **Acceptance Criteria** - [x]...

**Please describe the feature** As a developer, I want to investigate if unit tests can be implemented in the frontend so that the frontend will be more error proofing and...

Chore: improve gotenzymes deployment

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**Related issue(s) and PR(s)** This PR closes #1087 Since the strategies are quite different from the draft PR #1275, a new branch and PR is created. **Type of change** -...

integrate "show models to be updated" in proj.sh

1

**Please describe the feature** As a developer, I want the script that shows models to be updated in proj.sh so that we keep track of latest versions of models **Acceptance...

**Describe the bug** The version of the integrated GEMs, e.g. the Yeast-GEM, does not always match in the integrated GEMs table and history of models since the patched versions are...

**Please describe the feature** As a developer, I want the variable names related to externalDb to be replaced with e.g. `idInModels` to reflect their actual meaning. **Acceptance Criteria** - [...

In sections with coding format and code reviewing, it will be great to link to some examples from the NBIS github repository (or somewhere else). * some screenshots might also...

* Use continuous integration (CI) for repositories of tools, pipelines or web-servers etc. * What should be the recommended CIs * Instructions about how to use CIs (or just links...