sabre
sabre copied to clipboard
najoshi
Is there a hard limit to the number of samples Sabre PE can demultiplex? We have 142 samples in a barcode file- this causes Sabre PE to segfault 11 and...
got rid of the 3rd-line info in fastq files as it is waste of space and was not formatted correctly anyway (it retained the '@' on the read name)
~/sabre-master$ make gcc -Wall -pedantic -DVERSION=1.00 -O3 -c src/barcode.c FATAL:/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../libexec/as/x86_64/as: I don't understand 'm' flag! make: *** [barcode.o] Error 1 Any suggestions? I also heard that sable requires something called...
Hi, I'm Hanwen. I saw the usage about sabre on website (https://astrobiomike.github.io/amplicon/demultiplexing). And it is mentioned in the end of this document that the data with one index can be...
Hi, I am trying to add sabre to ~/.profile but it does not work. kindly help
Hi, new to this biof stuff. But used sabre a few times on my fastqs and worked great (Thanks a Lot). However, last run....can use bowtie2 to map non demultiplexed...
Hi, how should one incorporate technical replicates of the same individual sample within a dataset into their saber analysis? Specifically, how is this coded? To provide an example, in ipyrad's...
I've modified the code to allow for leaving the barcode sequence in the demultiplexed output as sometimes it is desired to. This is provided as the additional option "-s"
