naifahim

Thank you for your response. Before doing it, i have a question. Is this command or tools related to storage of the laptop? I have 40gb space left in the...

(parsnp-new) ***@***.***:/mnt/d/project/4/e.coli/2pro/parsnp/pubmed$ parsnp -c -p 8 -r reference.fna -d a -a c -o result --verbose 09:11:45 - INFO - |--Parsnp 2.1.4--| 09:11:47 - INFO - *********************** SETTINGS: |-refgenome: reference.fna |-genomes:...

(base) ***@***.***:/mnt/d/project/4/e.coli/2pro/parsnp/pubmed$ parsnp -c -r reference.fna -d a -a c -o result --verbose |--Parsnp v1.2--| For detailed documentation please see --> http://harvest.readthedocs.org/en/latest *********************** SETTINGS: |-refgenome: reference.fna |-aligner: libMUSCLE |-seqdir: a...

(base) fahim@DESKTOP-AJGON69:/mnt/d/project/4/e.coli/2pro/parsnp/pubmed$ conda activate parsnp-new (parsnp-new) fahim@DESKTOP-AJGON69:/mnt/d/project/4/e.coli/2pro/parsnp/pubmed$ parsnp -c -r reference.fna -d a -a c -o result --verbose 09:44:16 - INFO - |--Parsnp 2.1.4--| 09:44:18 - INFO - *********************** SETTINGS:...

Thank you for your email. please have a look. i have run it in env of 2.1.4 version without thread. I have 4gb RAM. is it a issue? it seems...

Hlw, could you please help us to figure this out? We are eagerly waiting for your reply. Thank you. On Sun, Jun 22, 2025, 3:29 PM afsansarwer ***@***.***> wrote: >...

Okay i will now try it out. One important question: Is 4gb RAM a problem? Sometimes linux got shut down automatically. On Thu, Jun 26, 2025, 1:49 AM Bryce Kille...

Thank you again for you reply. I would be grateful if you clarify the isse of RAM and how many genomes can we do in a single run? 1. I...

Thank you for your response. I am very glad to you for your prompt response. So can you please give me the full code? Considering partitions, RAM, divergent genome? Than...

722 fna genomes from NCBi (GCA assembled genomes) and 10 are of our own (fasta). Should i have to include ANI in the code? On Thu, Jun 26, 2025, 2:33...