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                                            nagendraKU

"ValueError: value.index does not match parent’s axis 0 names" error when trying to read h5ad that was processed through scVI

Hi ! I am new to the Scanpy/Anndata ecosystem, and trying to use scVI for data integration. I trained a scVI model on an Anndata object, saved the object as...

Simulate errors out when celltype names are only numbers, requires text prefix to run correctly.

I ran scaden simulate with celltype names being the Leiden cluster numbers. Got the following error message and the data.h5ad file was not created. > INFO Datasets: ['testdata_all_bat'] bulk_simulator.py:84 >...

enhancement