Naga Karthik Enamundram

RuntimeError: More than one value for "direction" found in subject images

2

### Is there an existing issue for this? - [X] I have searched the existing issues ### Problem summary Unable to load the image patches due to a runtime error...

Add edge (mirror) padding as preprocessing before inference for monai models

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Currently, the default preprocessing applied for the contrast-agnostic (monai) model is given in [this function](https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/master/spinalcordtoolbox/deepseg/monai.py#L165-L175). In [this line](https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/master/spinalcordtoolbox/deepseg/monai.py#L171), we note that the default padding (that is, zero padding) is applied....

This PR adds lesion-wise metrics to our fork of the MetricsReloaded package. This addition is to make the switch from `anima` to MetricsReloaded more streamlined. `anima` also computes lesion-wise metrics...

[v0.1.7] Issue running the command `mila init`

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### What command did you run? `mila init` ### Describe the bug I just install `milatools` locally and started setting up with `mila init`. I provided the mila username and...