mwfoster

contaminants filtered from TMT-Integrator

5

I have noticed that FragPipe v.18 removes contaminant proteins from the outputs in the TMT-report folder, whereas they were kept in FragPIpe v.17.1. I am using a bovine casein spike-in,...

Glycan identification in "combined_modified_peptide.tsv" file

3

Hi, We are performing glycopeptide identification and quantification across many samples. The data in the "assigned modifications" column of the "combined_modified_peptide.tsv" file gives only the mass of the glycan, not...