PyDesigner

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This PR fixes various reported bugs and updates documentation to tackle: - [ ] #305 - [ ] #303 - [ ] #306 - [x] #301 - [ ] #308...

TheJaeger

PyDesigner terminated with partial output - did it run out of memory?

2

**Describe the Issue** I ran pydesigner (resuming from a partial run), and it terminated (without any messages) at the following stage: ``` $ docker run -it --rm -v /home/avanti.shrikumar/repos/av_pku_analysis/prototyping/STI60510710_non_compliant/niftis:/input -v...

AvantiShri

The meaning of DTI parameters

1

Dear all, The WMTI processing spits out diffusivity parameters which are created using DTI. Therefore, I was wondering what the meaning of the DTI parameters is. Are they generated solely...

NN3265

Necessity of `-it --rm` flags when running from docker

1

Hi, I was trying to run pydesigner on a remote machine via an internal job management system, and was wondering about what happens if the "-it --rm" flags are excluded...

AvantiShri

DKI dataset with one with only one phase-encoding direction

3

Hello all, Thank you for introducing me to Pydesigner . I am new to the DKI preprocessing using MRtrix/fsl and pydesigner and Specifically, my collected data consists only of three...

abhishekpatil32

INSTALL PYDESIGNER PROBLEM

3

After completing all the installations and entering my conda activate mri folder, I execute the command "pip install." and I get the error I attached [PROBLEM PIP INSTALL.txt](https://github.com/muscbridge/PyDesigner/files/14919857/PROBLEM.PIP.INSTALL.txt) Thanks in...

leojcq89

Bumps [pillow](https://github.com/python-pillow/Pillow) from 10.0.1 to 10.3.0. Release notes Sourced from pillow's releases. 10.3.0 https://pillow.readthedocs.io/en/stable/releasenotes/10.3.0.html Changes CVE-2024-28219: Use strncpy to avoid buffer overflow #7928 [@​hugovk] Use functools.lru_cache for hopper() #7912 [@​hugovk]...

dependabot[bot]

### Discussed in https://github.com/muscbridge/PyDesigner/discussions/313 Originally posted by **RoosvOeveren** November 28, 2023 Hi PyDesigner community, Is it possible to run PyDesigner without any pre-processing at all? I have multi-shell data that...

gonzoBlackMamba

muscbridgelab

High value voxels

1

PyDesigner often outputs metric maps with very high or very low value voxels, typically around the edges of the maps. This is most common in MK and EAS RD. 

ryn-thorn