mujiezhang

I install the mpirun just now. and I do not find the ffindex_apply_mpi. I install hhsuite through conda, So this problem occur sometimes if hhusite installed through conda? How can...

Oh, thank you very much! You are so nice! The problem is solved. But I have another small question. I have several groups of proteins, and I want to find...

Sorry for my ignorance… I run the command ‘ffindex_apply 227_msa.ff{data,index} -i 227_a3m_wo_ss.ffindex -d 227_a3m_wo_ss.ffdata -- hhconsensus -M 50 -maxres 65535 -i stdin -oa3m stdout -v 0’ and it is right....

I have checked the 227_a3m.ffdata file, and it seems like a wrong file which contain ‘^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@’ But when I run the command ffindex_apply 227_a3m_wo_ss.ff{data,index} -i 227_a3m.ffindex -d 27_a3m.ffdata -- addss.pl...

　I run ‘ffindex_apply 227_a3m_wo_ss.ff{data,index} -i 227_a3m.ffindex -d 227_a3m.ffdata -- addss.pl stdin stdout’ and ‘ffindex_apply 227_a3m_wo_ss.ff{data,index} -i 227_a3m.ffindex -d 227_a3m.ffdata -- addss.pl’ and they generated the same results as ‘ffindex_apply 227_a3m_wo_ss.ff{data,index}...

Maybe I can try to install the hhsuite through source. Anyway, thanks a lot and you are so patient with me. Thanks again! 发送自 Windows 10 版邮件应用 发件人: Kamil 发送时间:...

Oh! But I do not know how to configure psipred. Should I download it throuh conda ? 发送自 Windows 10 版邮件应用 发件人: Kamil 发送时间: 2021年5月24日 21:31 收件人: soedinglab/hh-suite 抄送: mujiezhang;...

Thank you very much! Your advices are very useful! I am trying. 发送自 Windows 10 版邮件应用 发件人: Kamil 发送时间: 2021年5月24日 21:56 收件人: soedinglab/hh-suite 抄送: mujiezhang; Author 主题: Re: [soedinglab/hh-suite] issue...

Another stupid question…how to skip ss prediction…… 发送自 Windows 10 版邮件应用 发件人: Kamil 发送时间: 2021年5月24日 21:56 收件人: soedinglab/hh-suite 抄送: mujiezhang; Author 主题: Re: [soedinglab/hh-suite] issue about building local databse (#268)...

Thanks for your useful advices! And I got the final results. I have two more questions. The result file is something like ‘Query lcl|MH719189.1_prot_AYD80303.1_44 [locus_tag=Fc02_44] [protein=virion structural protein] [protein_id=AYD80303.1] [location=29314..30270]...