Malte Hoffmann

Yes, we do not. While we did not include CT in our evaluation either, I suspect that normalizing the intensities of your CT data may be helpful, or, alternatively, adapting...

Are your data two-dimensional? The SynthMorph models are fully convolutional and support varying image sizes (within the constraint specified by @adalca above), but they use 3D convolutions and cannot be...

Assuming your images `moving` and `fixed` are defined on the same voxel grid, and your `matrix` transforms the centered voxel coordinates of `fixed` to those of `moving`, moving `moving` can...

If this is still relevant, @angolin22, we now have a tutorial on affine registration at [w3id.org/synthmorph](https://w3id.org/synthmorph).

Hi @jmanjon, I do not recognize `SpatialTransformer_with_disp`. In general, VoxelMorph with `shift_center=True` works in a centered voxel coordinate system, assumed identical for the fixed and moving image. In contrast, ITK...

If you're looking to train an affine model, you may find the [affine SynthMorph tutorial](https://github.com/voxelmorph/voxelmorph?tab=readme-ov-file#tutorial) helpful. If you would just like to use a trained model, I would try the...

Thanks for spotting this issue and the proposed solution, @neurolabusc! We'll look into it in a couple of days.

I'm afraid I couldn't reproduce the issue for any of the subject-289 scans from CQ500 with the latest SynthStrip script in this repository. Is it possible that you obtained the...