mstrazar

Simplify delivery and interfacing

5

Hi guys, congratulations for the Nature methods paper on this. I have a couple of suggestions: - support running the tool from more standard input files rather than .biom (.csv,...

The implementation of CCA for more than 2 data sets can be sped up by using matrix operations more efficiently.

Single-cell Preprocess: Add TF-IDF

1

An alternative to `log(CPM+1)` transformation of count data is the TF-IDF transform, adopted from text analysis. Similar to finding characteristic words describing a topic in the document, TF-IDF can be...

##### Single Cell version commit 9edc5a08a7d29c5fc878b311dc309b757e03b41b (origin/master, origin/HEAD, master) ##### Expected behavior Load Data should remember paths in a schema-specific way, similar to File widget. ##### Actual behavior Load Data...

OWClusterAnalysis: Cluster-vs.-cluster instead of one-vs.-all

2

Perhaps applies to differential gene expression in general; If we want to find cluster specific genes, we have to compare the expression in cluster A to its most similar cluster....