Morgan Schwartz

Hi rjesud, I expect @ngreenwald may have some specific advice to add, but in the meantime here's a few things to look at. One notable difference between your data and...

I reviewed our previous releases and deepcell 0.9.0 supported tensorflow 2.4.1. I would suggest installing that version which should be compatible with your system.

Hi Jay, I confirmed that we are in the process of upgrading the tensorflow environment and model that runs on deepcell.org to match the one in deepcell 0.12. You can...

You may need to create an environment with Python 3.6-3.8 but any 0.11 version of deepcell should also be fine.

Hi Pascal-bucketbreaker, Can you verify that you are installing deepcell>=0.12.0? Generally we recommend that you use deepcell out of a docker container as we cannot ensure support for all operating...

Hi chnlyi, The foreground-background transform is used as part of the model training process, but it is not used in prediction. [`deepcell_toolbox.deep_watershed`](https://github.com/vanvalenlab/deepcell-toolbox/blob/89df4b87ba91c6d36b2ca9e2b31536835ca3f843/deepcell_toolbox/deep_watershed.py#L45) takes a list of images as inputs where...

Can you include the code snippet that you are working off so that I can have a bit more context for your questions?

Hi E5ten, We're currently limited by our version of tensorflow (2.5.1), but we are working on updates that will support python 3.10. Thanks for posting!

Hi Stephen, thank you for posting! Unfortunately, we won't be able to publish a conda package right now, but we'll keep it in mind for the future.

Hi Emilia! If I'm reading your logs correctly, it looks like you are running deepcell 0.10.0. Is that right? Could you try running the latest version of deepcell (0.12.4) and...