Matt Snyder, PhD

icon indicating an email [email protected]

icon location Seattle, WA icon location Bioinformatic programmer, data wrangler, biologist, and geneticist. This github is only maintained to show a very basic example of my skills.

Results 2 issues of Matt Snyder, PhD

Removing contaminants from samples

1 comment

This program is great! OK, I have identified which sequences are likely contaminants in my samples with the frequency, prevalence, and both methods. I now have a list of sequences...

Array[String?] compiles incorrectly to "(hash" and "(array:file)"

When using dxCompiler-2.10.4.jar, I've found a workflow level input type that does not appear to compile correctly. `Array[String] testReq` compiles correctly to `[stage-common.testReq (array:string)]` `Array[String?] testOp` **compiles incorrectly to** `stage-common.testOp...