Martin R. Smith

Can't push to organization repo

3

### Description When I try to push to a public organizational repo, I see a 403 permission denied error:  I can push to personal repositories (on my ms609 account)...

When attempting to append to a previous run, the error message points to invalid character position: ``` The error occurred when reading char. -326229434--326229435 on line 421 ``` The error...

### What is the current observed behaviour? When trying to append more generations to a short run in the same session of MrBayes 3.2.7a on Windows 10, I see: ```...

IQ-TREE multicore version 1.6.12 for Windows 64-bit crashes when analysing a morphological + DNA dataset with the following error: ``` Finish initializing candidate tree set (20) Current best tree score:...

Use variables to specify location. This could replace the existing examples, but I've retained them for completeness.

Encountering `callr_remote_error: subscript out of bounds` when loading remote package from GitHub

7

**Describe the bug** I'm encountering `subscript out of bounds` in a number of contexts. I'm using the same GHA workflow in two packages: one works fine; the other doesn't. **To...

run-rchk action cannot load libR.so

7

**Describe the bug** run-rchk cannot load libR.so **To Reproduce** I have a [GitHub action script](https://github.com/ms609/TreeTools/blob/master/.github/workflows/rchk.yml) including the Basic configuration given at the actions/run-rchk [readme](https://github.com/r-lib/actions/tree/v2/run-rchk): ``` jobs: rchk: runs-on: ubuntu-latest container:...

Mis-formatting of usage section for `<` S3 method

2

I am creating package documentation using roxygen 7.1.2 & pkgdown 2.0.2. My functions are written as ```r #' Sort some objects #' @param x,decreasing,na.last,\dots As in [`sort()`]. #' @export sort.multiPhylo

I am running tests in my package "TreeSearch" that make use of S4 methods in an underlying package "TreeTools". When I run tests interactively, or using the "Run tests" button...

Currently, if I include the line `skip()` in a testthat test file, I see ``` Error in `paste0(message, collapse = "\n")`: argument "message" is missing, with no default ``` I...