TreeDist

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To accompany KC.

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- [x] `SpectralClustering()` → `SpectralEigens()` ## Mappings: - [ ] Add t-SNE mapping - [ ] Add CCA mapping? ## Clustering - [ ] Option for clustering cutoff - [...

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The supplementary figure in https://www.mdpi.com/2073-4409/10/2/362#supplementary includes some duplicate notes. Try to reconstruct how the resulting matching arose, and throw a warning when this situation arises (as it seems undesirable?)

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Use Day (1985)'s algorithm to compute RF distances in linear time Day, W. 1985. [Optimal algorithms for comparing trees with labeled leaves](https://link.springer.com/content/pdf/10.1007/BF01908061.pdf). J. Classif. 2, 7–28.

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