Michael Schmid

Is there a way to label `circos.link` automatically?

5

Is there a way to label `circos.link` automatically? What I am looking for is a way where I do not need to call `circos.text` in addition.

Is there any possibility to input sketches for mash screen as the "mixture" input? If no: 1) Is this not possible for algorithmic reasons? 2) Is this just not implemented...

Changed code to Python 3

5

I changed Flexidot 1.06 to be suitable for running with Python 3. I can now generate basic dotplots for my Fasta files using Python3. Did NOT test all the functionality!...

Error when running prepDE.py

24

I get the following error when running prepDE.py on stringtie estimate output: ``` Traceback (most recent call last): File "./prepDE.py", line 255, in geneDict.setdefault(geneIDs[i],{}) #gene_id KeyError: 'STRG.337.1' ``` I only...

What is the minimum length for custom barcodes so that porechop is still able to identify them accurately?

Empirically good values for ONT data when generating custom database

9

What are empirically good values for `l` and `k` when generating a custom database which is going to be used for Oxford Nanopore data? Anyone some hints here? Would you...