Michael Winter

Possible to create custom colour schemes?

4

Hi, Im wondering if its possible to create custom colour schemes? I would like to colour my msa according to consensus, similar to how it is done in Jalview; higher...

Linking exon annotations with intron lines, and other things.

5

Hi, loving the package. Really crisp plots. There are a few questions i have. Im hoping you know of a way to draw exons with the intron line linking them...

Offsetting block/chromosome labelling

2

Hi @jokergoo, Great software! Is there a way to increase the distance between chromosome labels and the track? In the example below, i would like to make it so that...

Division by zero when trying to build trees?

12

Hi, when running SubPhaser i get the following error: ``` Traceback (most recent call last): File "/home/531734/.conda/envs/SubPhaser/bin/subphaser", line 33, in sys.exit(load_entry_point('subphaser==1.2.5', 'console_scripts', 'subphaser')()) File "/home/531734/.conda/envs/SubPhaser/lib/python3.8/site-packages/subphaser-1.2.5-py3.8.egg/subphaser/__main__.py", line 779, in main pipeline.run()...

Resources for macrosynteny plot customisation

4

hi @tanghaibao, Do you know of any resources or wikis to assist in the aesthetic customisation of the macrosynteny plots? Or is there a common language of commands i can...

Updated docker container

1

Hi, Is it possible to update the docker/ singularity container to 2.1.0 please? The current 2.0.0 version on dockerhub seems to contain the TIR Learner bug - https://github.com/oushujun/EDTA/issues/365 - ,...

Drawing cloud trees

1

Hi, I have used toytree in the past to generate cloud/densi trees from multiple gene trees. when trying to use it this time i get multiple errors (AttributeError: toytree has...

Problem allocating data in EM

2

Hi, Im getting the following error message `problem allocating data in EM` What does this error mean? And how can i fix it? Thanks