mpx353

Many thanks for your reply. I had not performed the maxFDR yet, doing this now. My last question was about the mean chi^2 value. I was just wondering why my...

Thanks Patrick. I just got the max FDR results: Maximum FDR Max FDR of Trait 1: 0.0985271605346 at probs = [0. 0.5 0. 0.5] Max FDR of Trait 2: 0.212188308953...

Just for your interest: Since the maxFDR was quite high, I was interested in the actual overlap of significant variants in the GWAS vs. MTAG. See below the results: Trait...

To finish/summarise this thread: do you think one could use MTAG in this case (provided awareness of the potential limitations implicated by the high FDR) or would you recommend to...