Marta Pérez Alcántara

icon company Wellcome Trust Sanger Institute icon location Hinxton, UK icon location Postdoc at Sanger Institute

Results 2 comments of Marta Pérez Alcántara

group.marker selection criteria

I did this and it gave reasonable results: ``` metadata = Biobase::pData(Mousesub.eset) counts = Biobase::exprs(Mousesub.eset) library(Seurat) library(patchwork) mouse_seurat = Seurat::CreateSeuratObject(counts,meta.data = metadata) [email protected]$percent.mt= PercentageFeatureSet(mouse_seurat, pattern = "^MT-") mouse_seurat = subset(mouse_seurat,...

Uninformative MemoryError message

Hello, I'm recently getting a similar issue when trying to deconvolute 27,358 cells from 73 donors. The initial SNP file has 8 million SNPs and after using --minCOUNT 20 and...