mozzaLB
mozzaLB
Surprisingly, if I take a subset of the LCMS files as input, there is no FDR error, even when using 14 out of the 16 files initially
[1_Burg_ctrl_H2O_1.zip](https://github.com/user-attachments/files/17339711/1_Burg_ctrl_H2O_1.zip) Sorry for the delayed response. Please find attached the pepXML files from the folder you mentioned.
There is only one interact-*.pep.xml file [interact.pep.xml.zip](https://github.com/user-attachments/files/17345627/interact.pep.xml.zip)
There is no combined.prot.xml file in this folder or the main folder. Where can I find it?