Tunc Morova

I was able to find good quality calls after somatic EVS > 17 which is not suprising but I dont have any way to justify this arbitrary number. Simply phred...

Hi, I am not a member of Monocle3 team. I had the exact problem. Dug deeper in the function https://rdrr.io/github/satijalab/seurat-wrappers/man/as.cell_data_set.html `cds [email protected] %>% head orig.ident nCount_RNA nFeature_RNA percent.mt RNA_snn_res.0.5 seurat_clusters...

Hi, quick question, Is there a way to filter my input file just as strelka considers in their variant calling ? based on my previous issue #119 , I would...

From the tutorial you should run velocyto as follows: ``` repeat_masker="/path/to/grch38_rmsk.gtf" reference_genes_gtf="/path/to/refdata-gex-GRCh38-2020-A/genes/genes.gtf" input_10x="$1" echo ${input_10x} velocyto run10x -m "$repeat_masker" "$input_10x" "$reference_genes_gtf" ``` **Your input_10x should be pointing to directory where...

Dear @dariober, Thank you very much for your suggestion. I think i am getting to the bottom of my problem. `snakemake --snakefile code/velo-db-utils/test.snakemake2 --jobs 1` When i execute it it...