morganee261

hello, I am using the CLI of pyscenic and "creating regulons" has been running for over a week. 2020-04-06 09:15:03,025 - pyscenic.cli.pyscenic - INFO - Calculating regulons. My data set...

Hi @liboxun, Unfortunately no, I haven't had any luck. It has been (and is still) running for a month now and I did not get an answer from the developers...

Hello @cflerin, I have been running the CLI of pyscenic ctx and that is what got stuck running for over a month. I stopped and I started running it with...

Hi @liboxun, I got it to run in less than 14 min by using the docker image. I used 20 cores so the more the better I think. But here...

Hi @cflerin I am trying to import the results of the CLI pyscenic (3 csv files) into R for further analysis but I am having a lot of problems. it...

Hi @liboxun I am having issues with the downstream analysis. I was wondering what platform you were using and if you had any luck with it. I have imported a...

Hi Vivian, I am trying to run scImpute from a csv of UMI values (22,278 genes and 39,663 cells) Here is the code I am running: WS_impute