GENO-ontology

GENO-ontology copied to clipboard

GENO currently only models the sex chromosome zygosity for mammals (with X and Y), but it should also accommodate the models for birds/reptiles which is Z and W. here's some...

nlwashington

https://github.com/dictyBase/migration-data/tree/master/ontologies cc @pfey03

cmungall

These are needed for GA4GH meta-data. I pointed them here to GENO as an alternative to creating enums. If there is a better home that's fine, but let's try and...

selewis

Map GENO to HPO inheritance/dominance

2

**Transferred from:** [NIF-11647](https://support.crbs.ucsd.edu/browse/NIF-11647) **Original Reporter:** Nicole Washington --- i notice that HPO has some dominance/inheritance terms. these should be reconciled some way with GENO. for example: http://www.human-phenotype-ontology.org/hpoweb/showterm?id=HP:0000006

mbrush

**Initially reported on RO tracker:** https://code.google.com/p/obo-relations/issues/detail?id=31 **Original Reporter:** Nicole Washington _Such a relation is needed in GENO as well, so we should work to get this into the RO and...

mbrush

**Duplicated from:** [NIF-11832](https://support.crbs.ucsd.edu/browse/NIF-11832) **Original Reporter:** Melissa Haendel _This modeling is related to the association model which will likely live in GENO for now, so duplicating from the NIF JIRA into...

mbrush

**Transferred from:** [NIF-11935](https://support.crbs.ucsd.edu/browse/NIF-11935) **Original Reporter:** Melissa Haendel --- Not necessarily exactly the same, but see types from MGI: spontaneous chemically induced (all) chemically induced (ENU) radiation induced transposon induced QTL...

mbrush

**Transferred from:** [NIF-11899](https://support.crbs.ucsd.edu/browse/NIF-11899) **Original Reporter:** Melissa Haendel --- This landmark paper describes the identification of chromosomal boundary regions. http://www-ncbi-nlm-nih-gov.liboff.ohsu.edu/pmc/articles/PMC3356448/ references other papers describing other types of chromosomal boundaries: A and...

mbrush