Kevin R. Thornton
Kevin R. Thornton
Adding site tables (#211) creates side-effects for simulations where fixations are "pruned". The required operations should be abstracted out into a function in `fwdpp::ts`.
The tree visitor is a bit too light of a design. We can base one on a shared pointer to a table collection. I'd say that the table indexes should...
Placeholder issue for now... The current handling of fixations is not ideal: * it leads to modeling errors * the pruning policy stuff affects efficiency of fitness calculations. Any fixes...
The current inheritance hierarchies for these types were originally developed so that fwdpp could use static_assert to enforce concepts via std::is_base_of. Given that the library does not (easily) support population...
The implementation in `fwdpp/internal/gamete_cleaner.hpp` is a hot mess. It seems like the whole thing could be replaced with populating an `unordered_map` of keys to fixations followed by a single pass...
If #100 is accepted, then it is possible that the current separation of mutations from mutation counts is no longer the most efficient strategy, and we'd have to benchmark adding...
This package is currently rather difficult to get working due to tf/keras issues. Installing current versions leads to import errors when training: ``` python ../../submodules/diploSHIC/diploSHIC.py train train test model 2021-06-08...