Matthew J. Oldach

failed to get manifest for: shub://nf-core/deepvariant: the requested manifest was not found in singularity hub

1

I'm getting an error when trying to pull with singularity (version 3.5.2-1.el7) ``` singularity pull --name nf-core-deepvariant.simg shub://nf-core/deepvariant FATAL: While pulling shub image: failed to get manifest for: shub://nf-core/deepvariant: the...

If I include the following, the Rmarkdown document is printed but the code is not showing. The `Hide` toggel doesn't seem to work?  When I set `echo =TRUE` for...

I get an error trying to run `funclist Error in lambdaHTTP(verb = "GET", action = act, query = query, ...) : Forbidden (HTTP 403). I downloaded and isntalled the **Amazon...

> 30,000 variants reported from trio-analysis with FPR 0.001?

6

I'm seeing a very high number of reported variants from `kevlar`. Even after restricting the `max_fpr` values to `0.001` I'm seeing `> 30,000` variants? ## `config.json` ``` { "ksize": 31,...

count_control error: estimated false positive rate is 0.385 (FPR too high, bailing out!!!

5

After running successfully through the example dataset I've ran `kevlar` on my own data but am getting an error at the `count_control` step, that the FPR is too high. I'm...

Building from source issues - Is TypeTE Docker container ready?

9

As I'm working with patient data (level 4 data) we're on a secure Linux compute cluster where, for security reasons, it is not possible to make outbound connections to the...

I'm getting an error trying to run `novoBreak`. It's in my path (placed `export PATH=$PWD/nb_distribution/:$PATH` in `~/.bashrc` and sourced it. I've also made each of the scripts executable with `chmod...