Matthew J. Oldach

Thank you for the suggestion @hyphaltip And @cjfields what you say about mixing with PERL5LIB seems to have been the issue. Before I had the following in the my `.bashrc`:...

The images used to have a background that matches the plot (grey) but when you apply your suggested work-around to rotate the images there is now white background visible which...

Is `retry()` currently not supported by `AsyncQueue()`? If so, could this **please** 🙏 be added?

Similar problem for me: ``` library(tidyverse) library(kaggler) comps1

Hi I was using a `venv` but I think the `PATH` was only one issue here. ``` $ export MAVIS_ALIGNER='bwa mem' $ export MAVIS_ALIGNER_REFERENCE=~/MAVIS/reference_inputs/hg19.fa $ git clone https://github.com/bcgsc/mavis.git $ cd...

Hi @creisle The names are roman numerals instead of numbers * `I` * `II` * `III` * `IV` * `V` * `X` * `MtDNA` If it would be helpful I...

It took a couple months to figure out downloading the `.json` annotations a while back (https://github.com/bcgsc/mavis/issues/205) but they look like they completed to me and I can find instances of...

Hi @creisle sorry about the delay. I've taken a look in the configuration logs for `limit_to_chr` and I can confirm that I see human chromosome names here. > There's a...

Hi @creisle it has been a while... my thoughts are no. However, I'm happy to re-visit my notes and try this out soon to help you improve the docs. My...

Okay I've remove `MoMI-G` and pulled in the new version with `git clone` and then re-ran for `Delly`. ``` (base) mtg@mtg-ThinkPad-P53:~/TEST-MOMIG$ sudo bash ~/MoMI-G/scripts/vcf2xg.sh ~/mtg-lab-projects/maddog/delly/delly.vcf momig-vcf-test-output ~/vg c_elegans.PRJNA13758.WS265.genomic.fa.gz + input=.//momig-vcf-test-output.pcf...