Matthew J. Oldach

Pulling the new code I get the following error: ``` ^C(venv) mtg@mtg-ThinkPad-P53:~/bin/GenESysV$ python utils/load_vcf.py --vcf test_data/test_4families_annovar.vcf.gz --tmp_dir /tmp --annot annovar --hostname 127.0.0.1 --port 9200 --index test_4families_annovar --study_name test_4families_annovar --dataset_name test_4families_annovar...

> Looks like your elasticserch is not running yet. You need to start it first. > […](#) > On Thu, May 28, 2020 at 2:13 PM Matthew J. Oldach ***@***.***>...

I thought I had but maybe I didn't? Trying again: ``` (venv) (base) mtg@mtg-ThinkPad-P53:~/bin/GenESysV$ python manage.py makemigrations core No changes detected in app 'core' (venv) (base) mtg@mtg-ThinkPad-P53:~/bin/GenESysV$ python manage.py migrate...

I'm using Ubuntu 20.04 not 18.04. When trying to run `pip install -r requirements.txt` I get an error from `pkg-resources==0.0.0` which caused the script to stop at that line. I...

Hi @msahraeian Using python2 instead of python3 helped with `pip install` but I get an error trying to run `metaSV` on my `reference genome` and `bam` file. ``` module load...

Actually not all the links are broken, only `204`: ``` $ grep -o -i "broken link" download_test_64093769.log | wc -l 204 ```

Hi @AliaksandrSiarohin thank you very much for your quick response. Sorry, I was mistakenly thinking that you needed to change the crop-size of the videos in order to improve resolution....

Didn't think of that! I think two of the `GATK` callers I tried before reported everything in the `VCF`and you had to filter for `PASS` but not with the tools...

Okay thank you. But, _riddle me this_, `kevlar` run with `max_fpr` of `0.05` and `max_fpr` of `0.001` are returning exactly the same number of putative variants when filtered for `PASS`....

Hi @standage thank you for getting back to me. I do have abundant memory so I increased everywhere it said `"memory"` in the `config.json` file to `80G` - as this...