flexidot

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Error reading fasta sequences - please check input files!

3

Hi thanks for this great software. While using this I am unable to start with the continuous error of "Error reading fasta sequences - please check input files!". This error...

kashiff007

Dear Flexidot Developers, thank you for flexidot - this is just what we needed. we would like to compare two different genomes in a pairwise dot-plot with annotation but I...

skim082

Changed code to Python 3

5

I changed Flexidot 1.06 to be suitable for running with Python 3. I can now generate basic dotplots for my Fasta files using Python3. Did NOT test all the functionality!...

ms-gx

Conda dist

1

Hello Flexidot team, I can't use the software, it kept giving an error. Here is it: ``` $ python2 ../flexidot/code/flexidot_v1.05.py -h Installing Python module: matplotlib python -m pip install --upgrade...

ZarulHanifah

Thanks for developing such a versatile tool; especially the ability to integrate annotations is very nice. However, I find that running comparisons of relatively long sequences is prohibitive. Specifically, I...

RvV1979

sub sequence

2

Hi, great tool, it has made my life so much easier! One thing that I think might be missing (unless I am mistaken) is the possibility of reading into a...

fabiopuddu

Flexidot computational time

8

Hi Thanks a lot for developing this toolkit looks really amazing. However, may I know the computational time and threads needed to obtain the graphs? Because I am trying it...

paolo002

Are there plans to make Flexidot suitable for Python 3?

1

First: Thanks for this awesome tool! :-) Second: Do you have plans to move to Python 3 soon? Thank you.

ghost

Self plot shading

3

Dear author, I go through SupplementaryData.pdf and found the example of using .gff3 to annotate the plot. But how can I add the figure legend, I did not see the...

jiadong324