annotation - pairwise comparisons

[skim082]

Dear Flexidot Developers,

thank you for flexidot - this is just what we needed. we would like to compare two different genomes in a pairwise dot-plot with annotation but I cannot figure out how to do so.

1. It seems that the annotation option only works for "self" and "all-comparisons" (-p 0/2) but not pairwise dot plots. Even for "all comparisons" the annotations only show on the diagonal tiles that are self-dotplots.

Is there a way to implement annotations for pair-wise comparison dotplots?

2. also, is there anyway to automatically assign color shading for the annotations without manually creating a color-config file?

Im currently using the python 3 version ("flexidot_v2.01_alpha01_py3").

thank you!