Mobin Asri

icon location UC Santa Cruz icon location The Computational Genomics Lab at UCSC

Results 2 issues of Mobin Asri

Margin could not phase some HiFi variants with UL reads

For polishing HPRC diploid assemblies we need to phase the variants called by applying DeepVariant on the alignments of all HiFi reads to each haplotype. We are using WhatsHap and...

Add some new features to project_blocks.py

- Handle cases when PAF file has secondary and unaligned records - Throw an error when the input bed file is not merged or sorted - Multi-thread reading PAF file