Emmanouil "Manolis" Maragkakis comments

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                                            Emmanouil "Manolis" Maragkakis

Memory usage exploding

Thanks for the reply @yuukiiwa. The reason we use a high `--readcount_max` is because the majority of our reads are on a very specific locus. As far as I understand,...

pyrange error "ValueError: all elements of `new_shape` must be non-negative"

Any update on this? I'm getting the same error.

pyrange error "ValueError: all elements of `new_shape` must be non-negative"

Hello @MuhammedHasan could you please provide some feedback on this issue? Several different runs fail with this error message.

pyrange error "ValueError: all elements of `new_shape` must be non-negative"

@MuhammedHasan I attach the output of `pip freeze > requirements.txt` [requirements.txt](https://github.com/mortazavilab/lapa/files/12164358/requirements.txt)

pyrange error "ValueError: all elements of `new_shape` must be non-negative"

hi @MuhammedHasan, any update on this?

No results with the new RNA model

I have the same issue with `dmr pair` as the last one above. I'm using the model `inosine_m6A_2OmeA`. Error: ``` batch failed: invalid data, valid coverage (63) is not equal...

No results with the new RNA model

Thanks @ArtRand. I used the `--assign-code` option above and it has fixed the problem.