Mikael Niku

icon indicating a website link https://www.helsinki.fi/en/researchgroups/developmental-interactions

icon company University of Helsinki icon location Researcher of early host-microbe interactions at the University of Helsinki, Finland

Results 3 issues of Mikael Niku

Optimal data for the frequency method?

4 comment

I’m slightly uncertain which DNA measures are optimal for the frequency based method (especially in case of samples containing animal tissues, where the proportion of microbial to animal DNA is...

Logic of the prevalence based method

6 comment

Thanks of the great tool! Regarding the prevalence method, do I get it right that it only considers the presence/absence of an ASV (etc) in samples and controls (rather than...

How to handle Element AVITI data (16S amplicon sequencing)

2 comment

I'm processing our first Element AVITI 16S amplicon sequencing data, using dada2 in QIIME2. I'm wondering how to do this optimally, as it appears that it behaves a bit differently...