Martin Mokrejš

Notably, the README.md does not specify Requirements. I realized boost is required when 97% of the code was compiled and then it failed. ``` /usr/bin/ld: cannot find -lBoost::date_time /usr/bin/ld: cannot...

Seems `2.3.0` was silently re-released, which broke Linux distros checking checksum of the release `tar.gz` file. At the moment I see (note the changed files in 2020): ``` -rw-r--r-- 1...

I came just by luck across this and wanted to test ... I could reproduce the same issue with gcc-4.4.7 on Linux and: 1. the patch as download did not...

``` Usage: fastq2sam [options] fastq:string+ Use --help for more information FAIL tests/generate_sequence.sh (exit status: 1) ``` @mr-c So what is `fastq2sam`? Where does it come from? Do you have proper...

Goood catch @sjackman but Guillaume seems dead.

> The second one is generated by github automatically, and is incomplete. I wish I could hide this link, but I can't (AKAIK) Please do not hide it, others want...

OK, then it comes from the project directory, seen in URL: https://github.com/gmarcais/Jellyfish

It is dev-cpp/sparsehash-2.0.3-r1::gentoo. I thought it could maybe be some issue with headers copied&fixed aside by gcc (it used to poke through headers in /usr/include and *correct* them in its...

@benvvalk Yes, there is a patch at https://packages.gentoo.org/packages/dev-cpp/sparsehash distributed along 2.0.3-r1. True, the `-std=c++11` helped to get the testcase compiled with gcc-5.4.0. ``` CXXFLAGS="-std=c++11" ... ... checking google/sparse_hash_map usability... yes...

Hi @vlad0x00 , it is probably caused by a "broken" FASTQ input. Edit any FASTQ test file you have and reduce the SEQ or QUAL part to empty string or...