Milad Miladi

Thank you @nsoranzo . Not only the --help arg is changed. I will check the release and test it locally soon.

Wonderful Saskia. Updates: - [x] Flye - [x] Graphmap

Hi @shiltemann, It seems all these tools are integrated now. Very nice! Regarding assembly graph visualization and supporting format, bandage looks promising. Flye also outputs the `gfa` format and the...

Check these two pls: https://github.com/BackofenLab/GraphClust/blob/master/galaxy_wrappers/NSPDK/NSPDK_candidateClusters.pl#L42 https://github.com/mmiladi/galaxytools/blob/6da73cbcaab43c81c206630144b07c297be9fb46/tools/GraphClust/NSPDK/NSPDK_candidateClusters.xml#L16

GSPAN output of Strucutre_to_GSPAN wrapper is a zipped text file of format bz2. Galaxy recognizes it with .null extension.

Linux Ubuntu 18.04

Our first guess was the pinning to the fixed and old version of hdf5: https://github.com/bioconda/bioconda-recipes/pull/21399 Since the newer versions of hdf5 have separate conda builds for mpi: Old: ![Screenshot from...

I can confirm that it works for 0.11.3! Also the patch has changed in that PR.

Great, Thanks. Would this also work with the window option '-w'? For the data I am using, the `-w` seems to be ineffective as I can see positions outside the...

Thanks a lot for your prompt supports. The coordinate option hint would be very life (time) saving :-)