Michael Matschiner
Michael Matschiner
Hi Ewelina, Can you please provide the full command with which you executed the script? Cheers, Michael > On 21 Apr 2022, at 01:51, ewelina ***@***.***> wrote: > > ...
I assume there are non-standard characters or other formatting issues with the Phylip file. If you don’t find the issue, I could have a look at the file next week....
Hi, I guess with SNP array data, D- or F4-statistics could be influence by how the SNPs were originally selected for the array. I assume this was not done randomly,...
With WGS-SNPs, I probably would not worry too much about linkage in the calculation of D or F4. You could of course try with or without thinning the dataset, but...
Hi,This is an error that occurs when updating BEAST2 to version >2.7. Can you please try again with the latest version of both BEAST2 and SNAPP?On 14 Mar 2023, at...
Hi, your `spc.txt` indicates that your dataset includes only a single species, "Afum". In that case, phylogenetic inference with SNAPP (or any other tool) wouldn't really make sense. Can you...
Hi, You’ll need a newer version of BEAST or an older version of this script. Cheers, Michael
Hi, the tree should be in Newick format, not in Nexus format. You can generate that if you open your tree file in FigTree (for example) and save again in...
Hi, the tree should include exactly one tip per species and that tip should be named with the species ID, not any of the specimen IDs. In principle it should...