Michel Lang

Results 218 comments of Michel Lang

As @berndbischl said, it is not yet supported. A simple version would not be too hard to implement. It all depends on the interface you need. What would be relatively...

> Wouldn't it make more sense to explicitly not try this in `batchtools` and use a workflow tool for job dependencies, like [`drake`](https://ropensci.github.io/drake/)? For more complex scenarios and to ensure...

Thanks for reporting. I guess I need to implement something like `cf$startCluster()` and `cf$stopCluster()` and call it internally in `submitJobs()`. This has the drawback that `submitJobs()` would have to wait...

Please make a backup of the registry, I want to have a look at it next week.

After the backup, just re-submit the job in question. And all other jobs with "time.queued" < 0.

Maybe even look into making the file system operations abstract, so we can switch them out with a network proto.

Can you call `squeue` without specifying `--clusters`? Can there be duplicated job.ids if you query multiple clusters?

How about this approach: * You specify a comma separated list of clusters to the constructor * For `submitJobs` you select one of the clusters via a resource * The...

Ah wait, this does not work for `killJobs()` 😞

https://github.com/mllg/batchtools/pull/179 Can you please comment if 1. This is now flexible enough for you guys 2. if we still need the `clusters` argument 3. if this PR is now obsolete