Michel Lang
NB: LSF's bsub needs the template provided via STDIN instead of a file. I currently see no way to accomplish this in a reliable way with SSH.
> I'm not sure exactly what you mean by "getting the quoting right". This was just a comment on the implementation ... > Are there any guidelines/docs to help users...
Renaming the package in DESCRIPTION should work.
You need to change "batchtools" to "batchcc" in the roxygen-tags `@useDynLib`. If in doubt, you could maybe also replace all occurrences of `"batchtools"` with `"batchcc"`?
You cannot control the submission rate directly. `batchtools` will try to submit any jobs passed to `submitJobs()` as fast as possible (but sequentially). If a submission fails, batchtools will try...
You can grep the error logs for the error message, retrieve the respective job ids and re-submit those jobs with different resource constraints. There is no automated way to do...
See https://github.com/mllg/batchtools/blob/master/R/sleep.R for the default function(s).
> Adding a chunking option which also chunks the result files seems like a worthwhile feature. Yes, this is on my todo, but I'm terribly busy with other projects at...
How would you do this without batchtools? Do you want to login as a different user via ssh? Then you should be able to set your username as part of...
$USER should evaluate to the user on the remote machine. However, getting the quoting right is horrible, so I would not be surprised if you encounter any bugs here.