telescope
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mlbendall
Quantification of transposable element expression using RNA-seq
When including the --stranded_mode RF in my telescope pipeline I get the following error: telescope: error: unrecognized arguments: --stranded_mode RF I am using Telescope version 1.0.3 Is there a solution...
tried running telescope on single cell data but getting this error: telescope: error: unrecognized arguments: --barcode_tag CB --stranded_mode RF
Hi, I have installed telescope with conda and tried running the test command. only three files were generated in the output, including telescope-checkpoint.npz, telescope-run_stats.tsv and telescope-TE_counts.tsv. But there was no...
Hi, is there a way to make telescope faster? I have a big genome (47G) and my bam file from STAR is about 27G. It seems that telescope will take...
Hi, I tried installing via conda which gave me the error exactly same as https://github.com/mlbendall/telescope/issues/44. Then I tried this I got anaconda error ``` mamba env create -n telescope https://github.com/mlbendall/telescope/raw/main/environment.yml...
Hi mlbendall, I had a problem when I was running telescope. Could you please let me know how to solve it? (from run in telescope_assign.py:197) 2021-02-11 01:21:50 INFO Loading annotation......
Hello, Thanks for sharing your code. I was wondering if there is any code for downstream analysis? Best, Sara
Hello @mlbendall, I hope all is going well on your side. Thank you for creating this awesome tool! Telescope has been invaluable in some of our projects. I just have...
Hi, Thanks for developing this tool. and I have two questions about the gtf annotation file that required by telescope 1. how to generate the file format like you provide...
Hi Matthew Thank you very much for developing this robust tool! I am conducting the differential analysis. I have a question regarding if we should take gene expression into consideration....
