mkinnaman

In addition - with my last couple of runs - have been throwing errors during the denovo signature command: Is this due to small sample size? Error: NMF::nmf - invalid...

I also get this error when running a file with multiple samples as opposed to one. WOuld be interested if their is a fix for this?

Hi Christoff, I think it has something to do with one particular sample needing MACorrection? It crashes while trying to correct for binding strength bias in sample T7. I am...

Great - looking forward to the update and as always appreciate the prompt and thorough response!

Chirstoff, Couple of issues. When I tried to install the new update - I got the following error: `ERROR: this R is version 3.6.2, package 'superFreq' requires R >= 4.0.0...

Christoff, My inclination is that it might be a bug in superfreq. I have had no trouble running old superfreq on the same bams that are giving me an issue...

I am running the most current release of Rsubread: 'R version 4.0.0 (2020-04-24) Platform: x86_64-conda_cos6-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core) Matrix products: default BLAS/LAPACK: /home/kinnamam/miniconda3/envs/superfreq3/lib/libopenblasp-r0.3.10.so Random number generation:...

Thanks Christoff, I can confirm I did as you described above and recreated the same error: `ERROR: Paired-end reads were detected in single-end read library : /juno/work/isabl/data/analyses/65/73/166573/I-H-134708-N3-1-D1-1.bam No counts were...

Christoff, I forked superfreq and made the modifications to DESCRIPTION to relax the R4.0 requirement which fixed the issues I was having with the newest update. I tried to rerun...

[SF_OSCE3.zip](https://github.com/ChristofferFlensburg/superFreq/files/5803364/SF_OSCE3.zip) Christoff - Many apologies in the delay of getting these files to you. Back working on this project. I have attached all the requested files. Please let me know...