Matt Johnson

The output of GenomicsDBImport is a directory with a specific structure underneath. The required option here, https://gatk.broadinstitute.org/hc/en-us/articles/5358869876891-GenomicsDBImport#--genomicsdb-workspace-path, provides the "name" of this directory, but you really don't need to worry...

In that case, I believe you want GatherVcfs after GenotypeGVCFs if the intervals don't overlap. We typically keep them separate, but I've used GatherVcfs in the past with a large...

> Hi, if I have 700 samples, can I use batch-size=700? You could, but using 0 for batch size has the same effect of not using batches. It's the default,...