Michael Notter
Michael Notter
Currently, `neurodocker` creates a `neurodocker_specs.json` file that contains the information to create a specific neurodocker image. Thinking about reproducibility and [`niflows`](https://github.com/niflows), would it make sense to have an additional summary...
The great thing about Nipype is that we can easily switch between different interfaces. For my fMRI workflows I often switch between FSL and SPM routines and from time to...
The segmentation node in the hands-on preprocessing notebook can cause "out of memory" issues on Windows system, if they didn't increase the RAM. It therefore would be preferable to remove...
As mentioned in https://github.com/miykael/nipype_tutorial/pull/77#issuecomment-385529548, the current [Resource Scheduling and Profiling]() example leads to some errors and needs to be corrected to work within the nipype_tutorial framework. The corresponding notebook is...
As mentioned in https://github.com/miykael/nipype_tutorial/pull/77#issuecomment-385529548, the current [Saving Workflows](http://nipype.readthedocs.io/en/latest/users/saving_workflows.html) user documentation is not working in the notebook. The corresponding notebook is [wip_saving_workflows.ipynb](https://github.com/miykael/nipype_tutorial/blob/master/notebooks/wip_saving_workflows.ipynb).
As mentioned in https://github.com/miykael/nipype_tutorial/pull/77#issuecomment-385529548, the current `wip_nipype_cmd` notebook will be replaced by [advanced_command_line_interface.ipynb](https://github.com/miykael/nipype_tutorial/blob/master/notebooks/advanced_command_line_interface.ipynb). The [advanced_command_line_interface.ipynb](https://github.com/miykael/nipype_tutorial/blob/master/notebooks/advanced_command_line_interface.ipynb) example is still very sparce and should be extended to show the mutliple facets of...
As discussed in https://github.com/miykael/nipype_tutorial/pull/35 with @djarecka and @satra, the goal is to move the user documentation from Nipype's main homepage to nipype_tutorial. As a first step, I've taken all the...
Some notebooks for a "For Developer" section could be: - [Submit PR via Github](https://miykael.github.io/nipype_tutorial/notebooks/z_development_github.html) - [Develope Interfaces for MATLAB, Python and Commandline](https://miykael.github.io/nipype_tutorial/notebooks/z_development_interface.html) - [Report Issues via Github](https://miykael.github.io/nipype_tutorial/notebooks/z_development_report_issue.html) The links are...
During a discussion with a colleague, I was asked if `atlasreader` also gives out all the brodmann areas. In this context, he also told me that he would be interested...
The "best" approach is probably the one from [Stelzer et al. (2013)](https://www.sciencedirect.com/science/article/pii/S1053811912009810). But to reduce computation time, we could look at [this openneuro post](https://neurostars.org/t/cluster-correction-for-partial-correlation-on-searchlight-map/2039) and implemented the approach mentioned in...