Meeta Mistry

Add materials on troubleshooting

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Add a troubleshooting section and review frequently encountered issues Day 2 qnd Day 3 classes tend to end early - we could afford to add some materials

updating the lesson goals, challenges, recommendations

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I edited some of these for the slide deck and we can add update them here. Small language edits

because there is a ctrl and stim sample from each patient, the design should be changed to paired

add a"what's next?" markdown

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In this lesson we can outline things one might do after marker identfication (DE, subclustering, trajectory analysis)

algorithm theory

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Add more links and Resources? In description of the course, discuss about course as more practical considerations not in-depth in algorithm theory

There should be continuity so we need to decide AnnotationHub or AnnotationDbi

Annotation lesson -- change to Annotation Hub?

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Currently we use AnnotationDbi We might want to change to AnnotationHub as we use in the DGE lesson, however this becomes a longer lesson since we need to describe the...

possibly move from slide deck to the markdown we have in RNA-seq