minjinhan

nhmmer failed to run - Error: Invalid alphabet type in target for nhmmer. Expect DNA or RNA

7

Hello I try to run barrnap to identify rRNA from a eukaryotic genome , the commad as follow: barrnap --kingdom euk --threads 20 --outseq rRNA.fasta < chr1.fasta After running, we...

Compile error on ubuntu-19.04

2

## Problem description Doesn't compile. src/extended/gff3_escaping.c: In function ‘gt_gff3_escaping_unit_test’: src/extended/gff3_escaping.c:196:35: error: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Werror=format-truncation=] snprintf(code, 10, "foo%%%Xbar", i); ^ In file included...

Error correct PE & Failed to pre-correct long reads

2

Hi, I tried to use MaSuRCA-4.0.5 to assemble a insect genome(~500Mb) on centos 8 system with 512 G Mem. We have 30x Illumina PE reads and 60x pacbio reads. But...

core dumped

5

Hi, We recently used spaln (version 3.4.13f) to align CDS sequences (~25,000 sequences) to a genome(~450Mb) on Centos 8 system (Our server has 1T of memory) . But we encountered...