Miriam Ferreiro Pantín

Execution time does not change even if some QC tools are skipped

2

### Description of the bug I have been testing the execution of the pipeline on an HPC. Despite performing the execution with 32 threads, the time (for 1 fastq pair-end...

Mutect2 error with Sarek 3.4.0

4

### Description of the bug After 5h56min of runtime, Sarek's pipeline gave me an error telling me that it cannot find typical linux commands such as sed and cat. I...

Error when write a file running Mutect2 with Sarek

8

### Description of the bug I'm running Sarek v3.2.3 on an HPC with Slurm as management system. When Mutect2 is running, execution stops due to an error when creating a...