Mikhail Kolmogorov

Sorry for the late response - we do plan to merge eventually. But this is not the priority currently, so I can't tell you exactly when this would happen..

Thank you - I'll give it a test!

Is it the same run from #682 ? If so, it means it progressed? Please see my questions in the other thread. And uploading the full flye.log will be helpful...

Thanks, and sorry for the late response! According to the log, program basically finished, but likely some memory inconsistency was revealed during the cleanup. You should be able to continue...

Closed due to inactivity, feel free to reopen if you still need help with this.

Hello, In your email you mentioned a 5Mb duplication, but your assembly size is 1.9 Mb. Is this the same dataset? Which contigs have duplications and how did you detect...

If you have two bacteria in the sample, it is likely that Flye actually recovers two separate genome. What exactly do you mean by doubled and how do you quantify...

Hi Barrett, Sorry for my late response. I am not sure I 100% understand what do you mean by doubling. How do you quantify this? Is there an output of...

Hi @BABRIGGS I unfortunately can't see the uploaded images.. I see that you responded via email - could you please try to add the images via github (https://github.com/fenderglass/Flye/issues/674)? Thanks, Misha

Thank you, this info is very helpful! I would separate duplications in plasmids and chromosomal sequences. Duplications of plasmids is indeed a known issue with Flye. It is mostly relevant...