Mikhail Kolmogorov

Glad it worked!

Hello, Sorry for my late response! Looks like the opposite problem from what most users want.. If purge_haplotigs did not collapse the assembly, the haplotypes should be quite different -...

Consensus computation may take a while, are you convinced that it has crashed? Is there any CPU activity? Does it work for you on smaller datasets? Any error messages in...

I think it is very likely that Python processes were killed by OS for some reason. This is system-specific and very hard to debug. I'd try to allocate more resources...

Closed due to inactivity, feel free to reopen if you still need help with this issue!

Makes sense, will add this to the list of TODOs for the next release, thanks!

DId you activate your environment using `mamba activate flye_29`? I think when you're running flye it pulls your local installation, rather than conda/mamba package.

Hello, Unfortunately it ran out of memory on the very last deduplication step of the assembly. Usually it does not cause problems with memory, but seems like this genome is...

Interesting, does the bioconda package (2.9.3) works for you? These docker images are built automatically from the bioconda packages, and I have little control over how they are built unfortunately....

Hello, `dip_polish` is indeed currently used in Hapup - so it is not abandoned.