preNivolumabOnNivolumab

EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment.

The dataset is from Riaz et al "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab" Cell (2017)

https://doi.org/10.1016/j.cell.2017.09.028

The counts data were downloaded from GEO accession GSE91061:

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE91061

The output of the Rmd file can be viewed on GitHub here:

https://github.com/mikelove/preNivolumabOnNivolumab/blob/main/preNivolumabOnNivolumab.knit.md