mike2vandy
mike2vandy
Hello, was this ever solved? I've been running into the same problem lately. Does it seem to be related to a specific version of samtools or minimap2? Running samtools 1.9...
What's the easiest way I can send you mine? FYI, this is coming from FAF09701 of the human genome data.
8982dd2b-fddd-4c21-99b8-906d4bf06afb
Hmm...let me update samtools and let you know what happens.
Updated to samtools 1.12 and minimap2 2.18-r1015 Still the same error: Error: spliced alignments detected when loading read 8982dd2b-fddd-4c21-99b8-906d4bf06afb Please align the reads to the genome using a non-spliced aligner...
Disenabling local file-caching seemed to help (I think). Thank you.
Same problem. Anybody have an update or solution?