mihinduk

ERROR: DIAMOND finished abnormally - but no info to help me fix the problem

3

Hi Bastiaan, I had a large contig file with many host sequences, which I removed using bbtools sketch, followed by parsing in R to generate a contig fasta (using the...

problems using group_by with cor.test report

1

**Describe the bug** I am unable to use tidyverse group_by and then pass data to corr.test and generate a report. Error in match.arg(alternative) : 'arg' must be NULL or a...

Combining individual circRNA read counts - error

19

**Describe the bug** DCC quits when trying to combine individual circRNA read counts. This is only when I run it using a docker in an interactive queue: bsub -Is -q...

Illumina_NextSeq_Run dies immediately

2

Hi Mike, I am trying to run some Illumina NextSeq samples, but I am failing immediately during primer removal with this error: Error executing rule remove_5prime_primer on cluster (jobid: 254,...

Enhancement: Host

5

Hi Mike, It would be VERY helpful if Hecatomb could link host information to the taxonomy. I have attached a file with a list of viral families and hosts that...

taxonomy improvement

4

Hi Mike, In working with the SIV data, I realized that there are spaces in taxonomic fields. For example, for families: Verrucomicrobia subdivision 3 Verrucomicrobia subdivision 6 This will make...