mihem

@mhkowalski or @Gesmira Sorry, are there any updates on this issue? I still have the same issue, now even worse because `group.by` is no longer an argument in `IntegrateLayers`. `CreateIntegrationGroups`...

So the culprit is the labels function: ``` function (object, values, select = c("first", "last", "common", "all"), simplify = TRUE, ...) { select

@igrabski or @mhkowalski I wrote a PR on May 27th, but no review yet unfortunately. Could you please have a look at that? Would think that all user would benefit...

@slowkow I am also very much interested in this issue. Thanks for this great package! I think it would be of great value for a lot of people if presto...

Hi Gesi, thanks for your fast response (as always!). Yes, Seurat v5 is installed. session Info ``` R version 4.3.1 (2023-06-16) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 22.04.3 LTS Matrix...

I spent some more time on this, when I just run the following parts of `RunAzimuth` I get the same error: ``` reference

Ah, but if i use the `RNA` assay instead of the `sketch` assay in the last command, it also fails: ``` data("pbmc3k") reference

@Gesmira Hi Gesi, I've seen that you've changed the code quite a lot. Should this now be fixed in the Seurat5 `seurat-object` or it this still work in progress? Thank...

Not a seurat team member. But as the error says you have tuplicate row names, but on the Seurat github channel you'll find several related issue https://github.com/satijalab/seurat/issues/1710

@bnprks sorry, are there any updates regarding BPCells submission to CRAN? I think this would be super useful because 1) compilations takes some time, 2) many of the github issues...