michoug
michoug
Hi, Yes, i was trying to improve the figure, as some samples names were cut and some of the options didn't seems very clear to me, such as the tick...
Hi, I saw that they were a few duplicate sequences (by id) that I'm checking to see if it's the issue Will get back to you about that
Yes, it was apparently the issue. It takes a lot of time for this to appear as it happens at the `Merging ORF annotations` step after all the annotations that...
Hi, it was the headers in my case
Thanks a lot for the answers, I tried it for some of the MAGs, however, it failed for many of them (>10Mb) because of a lack of training data in...
Novaseq
Hi, I have the same issue installing from source, so version 2,0 However it works fine with version 1.3.2 installing with the release version Best Greg
Hi, here is the output for my issue ``` lala [0.0%] Computing k-mer spectrums [Time: 0:00:00]A job failed (simka_temp/simka_database/kmer_spectrums/BODY/), exiting simka ``` ``` python /home/michoug/simka/scripts/simka2/core/simka2-run-job.py simka_temp/simka_database/kmer_spectrums/BODY/ count /home/michoug/simka/scripts/simka2/core/../bin/simka2-count -id BODY...
Unfortunately no, As of now, the version 1.3.2 works so I'll continue with it. If I have the same issue with a public dataset, I'll send it to you
No, didn't try further also Greg